COLLABORATIVE PROJECTS

TRANSBIO SUDOE aims at promoting interdisciplinary and interregional research in the field of health & life sciences.
TRANSBIO SUDOE can provide mobility support (transport & accommodation) for scientists interested in setting up collaborative research projects.

Below the procedure to launch a collaborative project :
  1. Create a TRANSBIO account => registration
  2. When approved, enter the intranet via the Enter TRANSBIO SUDOE bottom bar
  3. Select in partner access => Post collaborative project
For all questions or further help, contact your regional local WP2 mini-cluster responsible..

development of Field Programmable Gate Arrays

Partner A Member : Isles Baleares
Name of principal investigator : ROSELLO
Firstname : Jose louis
Email : j.rossello@uib.es
Position : Staff
Affiliation Name : department physics
Road : Cra Vallemossa
Postbox : 07120
Town : palma de mallorca
Country : Spain
Partner B Member : Valencia
Name of principal investigator : CODONER
Firstname : Franciso
Email : fcodoner@lifesequencing.com
Position : Staff
Affiliation Name : Lifesequencing, Parc Cientific Universitat Valencia
Road : C/ Catedratico Augustin Escardino, 9
Postbox : 46980
Town : Paterna (Valencia)
Country : spain
Request for financial support 3 scientists for 1 day (Partner A to Partner B)
3 scientists for 1 day (Partner A to Partner B)
Request for technical support :
- Need of TTO's support to ease collaboration agreements :
No
- Need for identification of funding opportunities (regional, national, European) : No

Added value of the cooperation : combining expertise in electronics (Dep of Physics, Balearics) with that of genetic mapping and gene sequencing (lifesequencing Valencia)

Summary of the proposal : The objective of this project is the development of Programmable Hardware or Field Programmable Gate Arrays ( FPGAs) to accelerate the process of sequencing and genetic mapping.

For doing that, we opt for a solution using FPGAs, as we are able to directly modify the hardware and focus it to specific processes, providing much higher processing speeds when compared to the use of microprocessors.

The project will begin working on the local alignment process ( Needleman -Wunsh ) and then try to speed the BLAST tool for sequencing and an adaptation of the tool for doing the mapping.

Thanks to the capabilities of the FPGA devices these processes could be accelerated considerably. These hardware tools are easier to protect using patents. All this implies a commercial level, greater control of the product and greater legal protection.

Ricardo RODRIGUEZ, Galicia
Anais GONZALEZ, Barcelona

CARE-U: take control of your health whichever you are
Denis DUPUY, Bordeaux
Julian CERON MADRIGAL, Barcelona
Sonia DA ROCHA, Bordeaux
Functional genomic analysis of the LSM-like protein family in C. elegans
Jorge PINTO PAIVA, Lisboa
Jacqueline GRIMA-PETTENATI, Toulouse
Olga SERRA FIGUERAS, Barcelona
SW European consortium for forest genomics: Transcriptional regulation and post-transcriptional regulation of secondary cell wall in forest trees\\\"
Joaquin DOPAZO, Valencia
Ligia SARAIVA, Lisboa

RNA-seq studies of Gram-negative pathogens
Ana ESTEVEZ, Lisboa
Lourdes LOURDES VEGA, Barcelona
Pineiro MANUEL PINEIRO, Galicia
Development of New Artificial Blood Substitutes using Fluorinated Ionic Liquids
Ana VARELA COELHO, Lisboa
Salvador VENTURA, Barcelona
Francesc CANALS, Barcelona
DiggingLabel‐free high resolution MS
Jose louis ROSELLO, Isles Baleares
Franciso CODONER, Valencia

development of Field Programmable Gate Arrays
View proposal
Raquel SA LEAO, Lisboa
Carmen MUNOZ-ALMAGRO, Barcelona

Improved detection of Streptococcus pneumoniae from carriage samples using non-culturable methods
Pedro SALEMA-FEVEREIRO, Lisboa
Pere PUIGDOMENECH-ROSELL, Barcelona

Using DNA editing strategies to increase crop tolerance towards emergent environmental stresses
Maria manuela CHAVES, Lisboa
Hipolito MEDRANO, Isles Baleares

Variability of water use efficiency in grapevines
Joan PERELLO, Isles Baleares
Josep maria CAMPISTOL, Barcelona

Develop clinical trials for a new drug for dialysis patients
Carla ANTONIO, Lisboa
Laetitia FOUILLEN, Bordeaux

Understanding drought response and recovery in Medicago truncatula using state-of-the-art metabolomics/lipidomics technologies